Category Archives: News

eBSDB/GenSoc meeting: Online conferencing hosted by The Node

Following the cancellation of BSDB/GenSoc2020, the meeting organisers have been seeking ways to maintain some elements of the meeting through online interactions. We do not plan to run a full virtual meeting, but we do have plans to enable speakers and poster presenters to give brief informal summaries, tweetorials, gifs or visual abstracts of their work, to share their talks or posters using figshare, or even to upload recordings of their talks if they wish to. These options are open to (and optional for) all presenters but we particularly encourage students and postdocs to participate. Hopefully this will also allow those who were not registered for the meeting this year to benefit too!

We also hope to provide an online version of our always-popular Careers session as well as interviews with some of our medal winners and other speakers. Other highlights will include the big reveal of this years Waddington Medal winner and even an e-conference-party via a curated spotify dancefloor playlist that you will all be invited to contribute to.

We will post guidelines for participation in eBSDB/GenSoc on this post over the coming few days. This will be updated periodically as our plans progress so do keep an eye on this blog post or the BSDB twitter feed https://twitter.com/_BSDB_ (the meeting hashtag is #BSDBGenSoc2020).

The BSDB and GenSoc are hugely grateful to the editors at Development and The Node for initiating these plans, providing expertise and infrastructure, and for their generous offer to put in the considerable amount of work to make this happen. Yet another reason to support your community journal!

Tatjana Sauka-Spengler- Winner of the 2020 Cheryll Tickle medal

In 2016, the BSDB introduced the Cheryll Tickle Medal, which is being awarded annually to a mid-career, female scientist for her outstanding achievements in the field of Developmental Biology.

The BSDB is proud to announce the 2020 awardee, Tatjana Sauka-Spengler

Originally from Bosnia and Herzegovina, Tatjana completed her undergraduate studies in Physics at the University of Sarajevo and soon after sought asylum from the Bosnian War in Czech Republic, where she became a High School teacher at the Gymnazium of Pardubice (1992-93). Having obtained her first graduate degree in Solid State Physics at the University of Paris (1999), Tatjana was selected for the “Interface Physics-Biology” Graduate programme and after discovering a passion for developmental biology at the MBL Embryology Course in Woods Hole, she pursued a second PhD in Biology in the group of Sylvie Mazan at the University of Paris, with whom she worked to elucidate the conserved gene regulatory mechanisms of gastrulation (1-3). She then went on to work as a postdoctoral researcher in the group of Marianne Bronner at the California Institute of Technology. There, she pioneered experimental approaches to study gene regulation in vivo using avian embryos (4,5). In parallel, she developed methodologies to for the study the genomics of the sea lamprey, Petromyzon marinus (6,7). Tatjana spearheaded the establishment of a system in the Bronner lab to efficiently produce sea lamprey embryos throughout the summer, which became so successful that it still attracts researchers from all over the world for the “lamprey season” in Caltech. This enabled Tatjana to pioneer molecular biology approaches in lampreys, including loss-of-function experiments and the development of enhancer reporter assays. This early work laid the foundation for her subsequent contributions to illuminate the evolution of vertebrates, through the window of comparative studies of neural crest gene regulatory networks (reviewed in (8)).

In 2012 she became a group leader in the MRC Weatherall Institute of Molecular Medicine (WIMM) at the University of Oxford, where s

he was awarded the prestigious Lister Institute Research Prize (2013) and the March of Dimes Basil O’Connor Research Award (2013). Her keen interest in emerging technologies and the development of novel molecular biology tools allowed her to consistently stay at the forefront of regulatory genomics in developmental biology. Indeed, Tatjana pioneered enhancer screens to identify thousands of cell-type specific cis-regulatory elements in avian and zebrafish embryos, which together with single cell genomics allow for the reverse engineering of entire gene regulatory networks (9). Tatjana is extremely dedicated to carrying out her research meticulously and strives to broaden the range of technologies employed (i.e. Cut-and-Run- sequencing, machine learning approaches to next generation sequencing analysis) in order to break the boundaries of research in her field. Now an Associate Professor for Genome Biology at the University of Oxford generously supported by the Wellcome Trust Senior Research Fellowship (2019), the Sauka-Spengler lab uses the neural crest, the enteric nervous system and the zebrafish heart epicardium to explore the dynamics of gene regulatory networks in development, regeneration, disease and evolution (9-17).

What further distinguishes Tatjana as a Cheryll Tickle awardee is her passion and dedication to the fostering of young talent in the field developmental biology. This stretches beyond the mentoring of her own group, and breadth of support we have received in her nominations for the award is a true testament to her contributions to the developmental biology community in the UK. There is no better way to understand this than through the words of the many people who have benefitted from her knowledge and energy since establishing her lab in 2012. I’ll therefore leave you with the following quotes, that do so well to emphasize how deserving she is of this award.

 “As her mentees, we believe Tatjana’s unique mentorship style is her most outstanding characteristic, and the achievements she seems to be most proud of are those of the people she mentored. Indeed, her first graduate students, postdoctoral fellows and advisees are now establishing their labs (i.e., Betancur lab in UCSF, Hockman lab, Uni. of Cape Town, Simoes-Costa lab in Cornell Uni., Strobl-Mazzulla lab in IIB-INTECH, Argentina). Testament to this, in 2018 she was awarded the RDM Award for Excellent Supervision (University of Oxford)”.  Chloe E. Tubman and Ivan L. Candido-Ferreira, DPhil candidates, University of Oxford.

“Tatjana is an inspirational role model for trainees and in particular for female scientists, for whom she provides guidance on balancing work and home life and inspires the confidence and direction to pursue individual goals”. Prof. Paul Riley, University of Oxford

“Simply put, Tatjana is an outstanding supervisor and mentor, not only to the people directly working with her, but also to any other junior scientist that approaches her for guidance”. Dr. Filipa Simões, University of Oxford.

“With her relentless energy and enthusiasm for excellent science combined with extensive knowledge and capacity to inspire, she has been a fantastic mentor. She sees the positive side of every situation and always provides a resolution, whether it be an experimental problem, writer’s block or personal matters”. Dr. Ruth Williams, University of Oxford.

“During our long-term collaboration Tatjana has hosted and supervised a number of my PhD students and post-doctoral fellows in her lab at the WIMM and trained them in maximising use of the zebrafish model to study heart development and regeneration. She has individually tutored my group members in bioinformatics to analyse RNA-Seq and ATAC-Seq datasets and modified gene editing approaches, which has been invaluable for the next stages of their research careers”. Prof. Paul Riley, University of Oxford.

“Tatjana very readily welcomes visiting scientists to her laboratory. She also generously shares her expertise and knowledge with collaborators. For example, she has applied her in vivo biotinylation approach in zebrafish (10,18), which enables the isolation of specific cell populations by affinity purification, to characterize the neutrophil response to mycobacterium infection (19). With colleagues she applied this approach to characterize different epicardial subpopulations (17), and has discovered how macrophages contribute to cardiac regeneration (16)”.  Prof. Andrea Munsterberg, UEA

Ben Steventon,

Biography adapted from Chloe E. Tubman and Ivan L. Candido-Ferreira, DPhil candidates, University of Oxford. Additional input and editing provided by Tatjana Sauka-Spengler.

Selected papers:

  1. Sauka-Spengler, T., B. Baratte, M. Lepage, and S. Mazan, Characterization of Brachyury genes in the dogfish S. canicula and the lamprey L. fluviatilis. Insights into gastrulation in a chondrichthyan. Dev Biol, 2003. 263(2): p. 296-307.
  2. Sauka-Spengler, T., B. Baratte, L. Shi, and S. Mazan, Structure and expression of an Otx5-related gene in the dogfish Scyliorhinus canicula: evidence for a conserved role of Otx5 and Crxgenes in the specification of photoreceptors. Dev Genes Evol, 2001. 211(11): p. 533-44.
  3. Sauka-Spengler, T., A. Germot, D.L. Shi, and S. Mazan, Expression patterns of an Otx2 and an Otx5 orthologue in the urodele Pleurodeles waltl: implications on the evolutionary relationships between the balancers and cement gland in amphibians. Dev Genes Evol, 2002. 212(8): p. 380-7.
  4. Betancur, P., M. Bronner-Fraser, and T. Sauka-Spengler, Genomic code for Sox10 activation reveals a key regulatory enhancer for cranial neural crest. Proc Natl Acad Sci U S A, 2010. 107(8): p. 3570-5.
  5. Sauka-Spengler, T. and M. Barembaum, Gain- and loss-of-function approaches in the chick embryo. Methods Cell Biol, 2008. 87: p. 237-56.
  6. Nikitina, N., M. Bronner-Fraser, and T. Sauka-Spengler, The sea lamprey Petromyzon marinus: a model for evolutionary and developmental biology. Cold Spring Harb Protoc, 2009. 2009(1): p. pdb emo113.
  7. Sauka-Spengler, T., D. Meulemans, M. Jones, and M. Bronner-Fraser, Ancient evolutionary origin of the neural crest gene regulatory network. Dev Cell, 2007. 13(3): p. 405-20.
  8. Sauka-Spengler, T. and M. Bronner-Fraser, A gene regulatory network orchestrates neural crest formation. Nat Rev Mol Cell Biol, 2008. 9(7): p. 557-68.
  9. Williams, R.M., et al., Reconstruction of the Global Neural Crest Gene Regulatory Network In Vivo. Dev Cell, 2019. 51(2): p. 255-276 e7.
  10. Trinh, L.A., V. Chong-Morrison, D. Gavriouchkina, T. Hochgreb-Hagele, U. Senanayake, S.E. Fraser, and T. Sauka-Spengler, Biotagging of Specific Cell Populations in Zebrafish Reveals Gene Regulatory Logic Encoded in the Nuclear Transcriptome. Cell Rep, 2017. 19(2): p. 425-440.
  11. Williams, R.M., U. Senanayake, M. Artibani, G. Taylor, D. Wells, A.A. Ahmed, and T. Sauka-Spengler, Genome and epigenome engineering CRISPR toolkit for in vivo modulation of cis-regulatory interactions and gene expression in the chicken embryo. Development, 2018. 145(4).
  12. Kenyon, A., D. Gavriouchkina, J. Zorman, V. Chong-Morrison, G. Napolitani, V. Cerundolo, and T. Sauka-Spengler, Generation of a double binary transgenic zebrafish model to study myeloid gene regulation in response to oncogene activation in melanocytes. Dis Model Mech, 2018. 11(4).
  13. Lukoseviciute, M., et al., From Pioneer to Repressor: Bimodal foxd3 Activity Dynamically Remodels Neural Crest Regulatory Landscape In Vivo. Dev Cell, 2018. 47(5): p. 608-628 e6.
  14. Hockman, D., et al., A genome-wide assessment of the ancestral neural crest gene regulatory network. Nat Commun, 2019. 10(1): p. 4689.
  15. Ling, I.T.C. and T. Sauka-Spengler, Early chromatin shaping predetermines multipotent vagal neural crest into neural, neuronal and mesenchymal lineages. Nat Cell Biol, 2019. 21(12): p. 1504-1517.
  16. Simoes, F.C., et al., Macrophages directly contribute collagen to scar formation during zebrafish heart regeneration and mouse heart repair. Nat Commun, 2020. 11(1): p. 600.
  17. Weinberger, M., F.C. Simões, R. Patient, T. Sauka-Spengler*, and P.R. Riley*, Functional heterogeneity within the developing zebrafish epicardium. Dev Cell, 2020: p. doi: 10.1016/j.devcel.2020.01.023.
  18. Trinh, L.A., V. Chong-Morrison, and T. Sauka-Spengler, Biotagging, an in vivo biotinylation approach for cell-type specific subcellular profiling in zebrafish. Methods, 2018. 150: p. 24-31.
  19. Kenyon, A., D. Gavriouchkina, J. Zorman, G. Napolitani, V. Cerundolo, and T. Sauka-Spengler, Active nuclear transcriptome analysis reveals inflammasome-dependent mechanism for early neutrophil response to Mycobacterium marinum. Sci Rep, 2017. 7(1): p. 6505.

Dear BSDB Member- February News!

With hopefully the worst of the winter behind us, we can all look forward to Spring and of course, the BSDB Spring Meeting, in Warwick, organised this year in collaboration with The Genetics Society. Highlights of the meeting will be talks from our 2020 Medal Winners, including Professor Tatjana Sauka-Spengler, winner of the Tickle Medal and Dr Wajid Jawaid, winner of the Beddington Medal. Congratulations to both!
The Waddington winner, is top secret, and not announced until their talk. Be there to see who has won our Society’s most prestigious prize!
TODAY is the deadline for Early Bird Registration

 

BSDB Annual General Meeting
The BSDB AGM will be held on the 17th March 18.05 – 19.05, in Warwick at the Spring Meeting (just before the party, which is also a highlight). This is your community and society, so if you have any important matters you’d like have discussed at the AGM, then please send an email in advance to BSDB.Secretary@ed.ac.uk

BSDB Committee Nominations
We will have four positions available on the BSDB committee this year, which will be voted on at the AGM. This includes three regular positions and a position for a postdoc representative. Please send nominations to BSDB.Secretary@ed.ac.uk. Nominators usually give a brief statement in support of their candidate at the AGM.

Newsletter
Our Communications Officer, Ben Steventon, is currently busy preparing the BSDB Newsletter, which is a proper account of all the BSDB news, so keep an eye out for that. Until then- we’ll see you at Warwick.

REGISTRATION AND ABSTRACT SUBMISSION NOW OPEN: ISB/BSDB International Conference 2020.

We are delighted to announce the ISD/BSDB International Conference 2020 registration and abstract form is now open!

The meeting will be held on Sunday 13th – Wednesday 16th September 2020 at the Excelsior Hotel, Valletta, Malta.

 

Register here

 

The deadline to submit your abstract is Midnight GMT Friday 12 June, 2020. Please click the button below in order to submit your abstract online.

 

Submit your abstract here

 

 

BSDB Childcare grants

The BSDB have set up a fund to help offset additional child care costs incurred by participants or speakers when participating at BSDB Spring or Autumn meetings. Eligible costs include contributions towards fees for a baby-sitter or child-care facility, travel costs for a care giver, or travel costs for taking the child to the meeting etc. This fund is not strictly restricted to childcare – requests for costs related to other caring responsibilities will also be considered.

Please note that (for now) this fund can only be used for attendance at BSDB meetings where the applicant will present their work as a poster or a talk.

 

 We will provide up to a maximum of £250 per applicant.

 Applicants must be BSDB members. 

 The application deadline is 6 weeks prior the start of the relevant BSDB meeting. We aim to inform applicants of the outcome within 2 weeks of the deadline.

 To apply please email the meetings secretary Sally Lowell at  meetings@bsdb.org with the following information:

* Your name and email address

* Your current place of work (Institution /City /Country)

* Which BSDB meeting you plan to attend

* Title and co-authors for the poster or talk that you will present at the meeting

* Confirmation that you are a member of the BSDB

* A justification for why the support is required (no more than 250 words)

* A breakdown of the costs requested (no more than £250)